Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs73145123 chr3:100358041 G/A 1.15E-5 297 21.85 19.4 12.05 KM Plot
CESC rs73202281 chr3:129140903 T/C 4.54E-5 292 21.2 21.33 11.95 KM Plot
CESC rs73202302 chr3:129173402 A/G 4.65E-5 288 22.4 20.63 14.73 KM Plot
CESC rs73204209 chr3:129191176 A/T 3.64E-5 292 21.47 21.27 14.73 KM Plot
CESC rs73204242 chr3:129241009 C/T 4.5E-5 295 21.73 20.63 14.73 KM Plot
CESC rs73379021 chr8:144665111 G/A 1.69E-6 287 21.12 23.3 16.08 KM Plot
CESC rs73424667 chr7:108596103 T/C 5.03E-5 297 21.85 21.13 11.6 KM Plot
CESC rs73489433 chr11:33084165 A/G 9.13E-7 295 21.73 22.98 1.7 KM Plot
CESC rs73591955 chr16:67782568 G/T 3.75E-5 289 20.77 26.32 17.15 KM Plot
CESC rs73593810 chr16:67866783 C/T 2.75E-6 294 20.92 28.47 17.43 KM Plot
CESC rs73594554 chr16:67920049 G/A 9.47E-7 293 20.92 28.58 17.43 KM Plot
CESC rs73594556 chr16:67925435 G/A 2.01E-6 295 20.7 28.7 17.43 KM Plot
CESC rs73594581 chr16:67955554 G/A 2.88E-7 296 20.23 29.57 16.87 KM Plot
CESC rs73599521 chr16:67733322 G/A 5.63E-6 285 21.07 26.27 16.87 KM Plot
CESC rs73608603 chr11:122843785 A/G 6.78E-7 292 21.13 24.9 4.58 KM Plot